Laboratory of Biosystem Dynamics (LBD)

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Published Software:

  • SGNSim (Simulator of delayed stochastic genetic circuits)

  • SGNS2 (Simulator of delayed stochastic genetic circuits. Version 2, which includes transient compartmentalization of reactions)

  • CellLine (Simulator of genetic circuits within cell lineages)

  • Mytoe (Software for image analysis of mitochondria)

  • CellAging (Software to study segregation and partitioning in division in cell lineages of Escherichia coli)

  • Cell Segmentation Tool (MAMLE Tool for image analysis of E. coli and other bacteria)

  • ZebIAT (Tool for image analysis of zebrafish embryos)
  • RNANumbers (Estimation of fluorescence-tagged RNA numbers from spot intensities)

  • RateLimit (Tool to identify rate limiting steps in transcription from RNA production times in live cells)
  • SCIP (A Single-Cell Image Processor toolbox)