”Signal and Data Compression based on Statistical Modelling and Inference”

Publications of the group

during the period 1998-2004

1. Articles in journals (21)

[1] C.D. Giurcaneanu and I.Tabus. Cluster structure inference based on clustering stability with applications to microarray data analysis. Journal of Applied Signal Processing, Special issue in Genomic Signal Processing, Vol. 2004, No. 1, 64–80, 2004.

[2] C.D. Giurcaneanu, I. Tabus, J. Astola, J. Ollila and M. Vihinen. Fast iterative gene clustering based on information theoretic criteria for selecting the cluster structure. Journal of Computational Biology, to appear, 2004.

[3] A. Vasilache and I. Tabus. Robust indexing of lattices and permutation codes over binary symmetric channels. Signal Processing, Vol. 83, No. 7, pp.1467-1486, 2003.

[4] J. Astola, E. Dougherty, I. Shmulevich, I. Tabus. Editorial: Genomic Signal Processing. Signal Processing, Special issue on Genomic Signal Processing, Vol. 83, No.4, April, 2003.

[5] I. Tabus, J. Rissanen and J. Astola. Classification and feature gene selection using the normalized maximum likelihood model for discrete regression. Signal Processing, Special issue on Genomic Signal Processing, Vol. 83, No.4, pp. 713-727, April, 2003.

[6] Stefanoiu, D., Tabus, I. Lossless Signal Compression Using Adaptive Lifting I2I Transforms. Studies in Informatics and Control, Vol. 11, No. 4, pp. 313-329, 2003.

[7] R. Iordache, I. Tabus, and J. Astola. Robust index assignment using Hadamard transform for vector quantization transmission over finite-memory contagion channels. Circuits, Systems and Signal Processing, Vol. 21, No. 5, pp. 483-507, 2002.

[8] I. Tabus, J. Rissanen. Asymptotics of Greedy Algorithms for Variable-to-Fixed Coding of Markov Sources. IEEE Trans. Information Theory, Vol. 48, No. 7, pp. 2022-2035, July 2002.

[9] R. Niemistö, B. Dumitrescu and I. Tabus. SDP design procedures for near-optimum IIR compaction filters. Signal Processing, Vol. 82, pp. 911-924, 2002.

[10] Stefanoiu, D., Tabus, I. Euclidean lifting schemes for I2I wavelet transform implementation. Studies in Informatics and Control, Vol. 11, No. 2, pp. 255-270, 2002.

[11] C.D. Giurcaneanu, I. Tabus. Optimal coding of quantized Laplacian sources for predictive image compression. Journal of Mathematical Imaging and Vision, Vol. 16, No. 3, pp. 251-268, May 2002.

[12] A. Vasilache, B. Dumitrescu, I. Tabus. Multiple-Scale Leader-Lattice VQ with Application to LSF Quantization. Signal Processing, Vol. 82, No. 4, pp. 563-586, 2002.

[13] C.D. Giurcaneanu, I. Tabus, S. Mereuta. Using contexts and R-R interval estimation in lossless ECG compression. Computer Methods and Programs in Biomedicine, Section I: Methodology, No. 67, pp. 177–186, March 2002.

[14] I. Tabus and J. Astola. On the Use of MDL Principle in Gene Expression Prediction. Journal of Applied Signal Processing, Volume 2001, No. 4, pp. 297-303, December 2001.

[15] B. Dumitrescu, I. Tabus, P. Stoica. On the parameterization of positive real sequences and MA parameter estimation. IEEE Transactions on Signal Processing, vol. 49, no. 11, pp. 2630–2639, November 2001.

[16] B. Dumitrescu, I. Tabus. Predictive LSF computation. Signal Processing, vol.81, no.10, pp. 2019-2031, 2001.

[17] I. Tabus, C. Popeea and J. Astola. A Design Procedure for Optimal Energy Compaction IIR Filters. IEEE Trans. Circuits and Systems II, Vol. 48, No. 7, 740–744, July 2001.

[18] C.D. Giurcaneanu, I. Tabus, J. Astola. Adaptive context based sequential prediction for lossless audio compression. Signal Processing, vol 80, pp. 2283-2294, 2000.

[19] D. Petrescu, I. Tabus, and M. Gabbouj. Library-Median-Stack (L-M-S) Filters for Image Restoration Applications. IEEE Transactions on Image Processing , IP-8:1299-1305, September, 1999.

[20] D. Petrescu, I. Tabus, and M. Gabbouj. Prediction Capabilities of Boolean and Stack Filters for Lossless Image Compression. Multidimensional systems and signal processing , vol.10, no.2, 161-187, April, 1999.

[21] R. Niemisto, I. Tabus, and J. Astola. A fast algorithm for adaptive polynomial filtering. Signal Processing, vol.70, no.2, pp.147-151, October 1998.

2. Book chapters, collections (6)

[22] J. Rissanen, I. Tabus. Kolmogorov’s structure function in MDL theory and lossy data compression. In ”Advances in Minimum Description Length: Theory and Applications”, (P.D. Gr¨unwald, I.J. Myung, M.A. Pitt, eds), The MIT Press Cambridge, 2003.

[23] I. Tabus, C. Mircean, W. Zhang, I. Shmulevich, J. Astola. Transcriptome-based glioma classification using informative gene set. In ”Genomic and molecular neuro-oncology” (W. Zhang and G. Fuller, eds), Jones and Bartlett Publishers, pp. 205-220, 2003.

[24] Astola, J., Dougherty, E., Shmulevich, I., Tabus, I. (editors) Signal Processing, Special issue on Genomic Signal Processing, Vol. 83, No.4, 219 pages, April, 2003.

[25] Tabus, I., Rissanen, J., Astola, J. Normalized maximum likelihood models for Boolean regression with application to prediction and classification in genomics. In ”Computational And Statistical Approaches To Genomics” (W. Zhang and I. Shmulevich, eds.), Kluwer Acadmic Publishers, pp. 173-196, 2002.

[26] Fuller, G., Hess, K., Mircean, C., Tabus, I., Shmulevich, I., Rhee, C., Aldape, K., Bruner, J., Sawaya, A., Zhang, W. Human glioma diagnosis from gene expression data. In ”Computational And Statistical Approaches To Genomics” (W. Zhang and I. Shmulevich, eds.), Kluwer Acadmic Publishers, p. 241–256, 2002.

[27] D. Petrescu, I. Tabus, M. Gabbouj. Optimal Design of Boolean and Stack Filters and Their Application in Image Processing. In Nonlinear Model-Based Image/Video Processing and Analysis, C. Kotropoulos, I. Pitas (Editors) ISBN: 0-471-37735-X, Wiley Interscience, pp. 15-58 April 2001.

3. Articles in conference proceedings and technical reports (64)

[28] I. Tabus, J. Astola. Clustering the non-uniformly sampled time series of gene expression data. Proceedings of ISSPA 2003, International Symposium on Signal Processing and Applications, Paris, July 2-5, p. 61–64, 2003.

[29] C.D. Giurcaneanu, I. Tabus, I. Shmulevich, W. Zhang. Stability-based cluster analysis applied to microarray data. Proceedings of ISSPA 2003, International Symposium on Signal Processing and Applications, Paris, July 2-5, p. 57-60, 2003.

[30] C.D. Giurcaneanu, I. Tabus, I. Shmulevich, W. Zhang. Clustering genes and samples from glioma microarray data. Proceedings of the First South-East European Symposium on Interdisciplinary Approaches in Fractal Analysis, IAFA 2003, Bucharest, Romania, 7-10 May, pp. 115-120, 2003.

[31] Hofman, J., Tabus, I. Fax document compression using optimal minimax redundancy code. In: Huttunen, H., Gotchev, A., Vasilache, A. (eds.), Proceedings of the 2003 Finnish Signal Processing Symposium, FINSIG’03, Tampere, Finland, 19 May, p. 174-177, 2003.

[32] C.D. Giurcaneanu, I. Tabus, C. Stanciu. Lossless audio compression with optimal codes for Laplacian distribution. Proceedings of the First South-East European Symposium on Interdisciplinary Approaches in Fractal Analysis, IAFA 2003, Bucharest, Romania, 7-10 May, pp. 73–78, 2003.

[32]I. Tabus, G. Korodi, J. Rissanen. DNA Sequence Compression Using the Normalized Maximum Likelihood Model for Discrete Regression. Data Compression Conference DCC’2003, Snowbird, Utah, March 24-27, 2003.

[33] C.D. Giurcaneanu and I. Tabus. Stability methods for estimating the number of clusters in microarray data. NSIP03, IEEE-EURASIP Workshop on Nonlinear Signal and Image Processing, Grado-Gorizia, Italy, June 8-11, 2003.

[34] Mircean, C., Tabus, I., Astola, J., Kobayashi, T., Shiku, H., Yamaguchi, M., Shmulevich, I., Zhang, W. Quantization and similarity measure selection for discrimination of lymphoma subtypes under k-nearest neighbor classification. Technical Report, Tampere University of Technology, Institute of Signal Processing, ISBN 952-15-1103-6, pp. 1-22, 2003.

[35] Giurcaneanu, C. D., Tabus, I., Stanciu C. Context-based lossless image compression with optimal codes for discretized Laplacian distributions. In: Dougherty, E. R., Astola,

J. T., Egiazarian, K. O. (eds.). Proceedings of SPIE Electronic Imaging, Image Processing: Algorithms and Systems II, Santa Clara, California, USA, 21-23 January, p. 20-30, 2003.

[36] Vasilache A., Tabus, I. Image coding using multiple scale leader lattice vector quantization. In: Dougherty, E. R., Astola, J. T., Egiazarian, K. O. (eds.). Proceedings of SPIE Electronic Imaging, Image Processing: Algorithms and Systems II, Santa Clara, California, USA, 21-23 January, p. 9–19, 2003.

[37] Nicorici, D., Astola, J., Tabus, I. Computational identification of exons in DNA with a Hidden Markov Model. Proceedings of GENSIPS, Workshop on Genomic Signal Processing and Statistics, October 11-13, Raleigh, North Carolina, USA, 2002.

[38] D. Stefanoiu, I. Tabus, F. Ionescu. Sampled Data Classifiers. The 6th International Conference on Knowledge-Based Intelligent Information and Engineering Systems, KES-2002, Crema, Italy (IOS Press, ISBN: 1-58603-280-1), 199–203, September 16-18, 2002.

[39] Giurcaneanu, C. D., Tabus, I., Astola, J. Criteria for testing the equality on a subset of the covariance matrix spectrum and their applications. Proceedings of International TICSP Workshop on Spectral Methods and Multirate Signal Processing, SMMSP’2002, Toulouse, France, September 7-8, TICSP Series # 17, pp. 19-26, 2002.

[40] Stefanoiu, D., Tabus, I. Adaptive I2I wavelet trees with quotient-reminder updating for lossless signal compression. Proceedings of International TICSP Workshop on Spectral Methods and Multirate Signal Processing, SMMSP’02, Toulouse, France, September 7-8, TICSP Series # 17, pp. 203-210, 2002.

[41] Vasilache, A., Tabus, I. LSF quantization with multiple scale lattice VQ for transmission over noisy channels. Proceedings of EUSIPCO 2002, XI European Signal Processing Conference, September 3-6, Toulouse, France, Vol. 1, pp. 277-280, 2002.

[42] Tabus, I., Rissanen, J., Astola, J. A classifier based on normalized maximum likelihood model for classes of Boolean regression models. Proceedings of EUSIPCO 2002, XI European Signal Processing Conference, September 3-6, 2002, Toulouse, France, Vol.1, pp. 119-122, 2002.

[43] Suojoki, T., Tabus, I. A novel efficient normalization technique for sonar detection. Proceedings of the 2002 International Symposium on Underwater Technology, 16-19 April 2002, Tokyo, Japan., p. 296–301, 2002.

[44] Mircean, C., Tabus, I., Astola, J. Quantization and distance function selection for discrimination of tumors using gene expression data. In: Kessler, M. D., Mueller,

G. J. (Eds). Functional Monitoring and Drug-Tissue Interaction, 21-24 January, San Jose, California, USA, Proceedings of SPIE, vol. 4623, 2002.

[45] R. Niemistö and I. Tabus. Signal Adaptive Subband Decomposition for Adaptive Echo Cancellation. In Proceedings of the 7th International Conference on Acoustic Echo and Noise Control, IWAENC 2001, pp. 53-56, Darmstadt, Germany, September 2001.

[46] B. Dumitrescu, I. Tabus, S. Peltonen, J. Astola, E. Dougherty. Efficient design of minimax ODIF robust stack filters. In ISSPA2001 Sixth International Symposium on Signal Processing and its Applications, Kuala-Lumpur, Malaysia, August 13-16, pp. 44–47, 2001.

[47] R. Iordache, I. Tabus, A. Beghdadi Median-based postprocessing for VQ image transmission over noisy channels. In ISSPA2001 Sixth International Symposium on Signal Processing and its Applications, Kuala-Lumpur, Malaysia, August 13-16, pp. 48–51, 2001.

[48] R. Niemistö and I. Tabus. Signal adaptive subband decomposition for adaptive noise cancellation. In Proceedings of the 15th European Conference on Circuit Theory and Design, ECCTD 2001, vol. 1, pp. 53-56, Espoo, Finland, August 2001.

[49] R. Niemistö, B. Dumitrescu, I. Tabus. Optimization of IIR compaction filter with fixed angle poles. In ISPA 2001 2’nd International Symposium on Image and Signal Processing and Analysis, Pula, Croatia, June 19–21, pp.524–529, 2001.

[50] R. Iordache, I. Tabus. Index assignment for VQ image transmission over bursty channels. In ICT 2001, IEEE International Conference on Telecommunications, June 4-7, Bucharest, Romania, Vol.II, pp. 127–132, 2001.

[51] B. Dumitrescu, I. Tabus. SQLP design of factorable FIR Nyquist filters. In ICT 2001, IEEE International Conference on Telecommunications, June 4-7, Bucharest, Romania, Vol.I, pp. 399–404, 2001.

[52] I. Tabus and J. Astola Using MDL for Gene Expression Prediction from Microarray Measurements. In NSIP01, Baltimore, Maryland, USA, June 3-6, 2001.

[53] S. Peltonen, I. Tabus, J. Astola, E. Dougherty, N. Hirata. Robust optimization of stack filters. In NSIP01, Baltimore, Maryland, USA, June 3-6, 2001.

[54] C.D. Giurcaneanu, I. Tabus, and S. Mereuta Long term prediction using QRS detection for lossless ECG compression. In NSIP01, Baltimore, Maryland, USA, June 3-6, 2001.

[55] T. Suojoki, I. Tabus Nonlinear Filter Based Normalization Techniques For Sonar Detection. In NSIP01, Baltimore, Maryland, USA, June 3-6, 2001.

[56] R. Niemisto, B. Dumitrescu, I. Tabus SDP Design Procedure for Energy Compaction IIR Filters. In ICASSP-2001, Salt Lake City, Utah, vol. VI, pp. 3825-3828, May 7-11, 2001.

[57] A. Vasilache and I. Tabus. Indexing and entropy coding of lattice codevectors. In ICASSP-2001, Salt Lake City, Utah, May 7-11, vol. IV, pp. 2605-2608, 2001.

[58] C.D. Giurcaneanu, I. Tabus. Low-complexity transform coding with integer-to-integer transforms. In ICASSP-2001, Salt Lake City, Utah, May 7-11, vol. IV, pp. 2601-2604, 2001.

[59] J. Kataja, I. Tabus. Application of the LS-LMS algorithm in Active Noise Control in ducts. In IASTED Signal and Image Processing, Las Vegas, pp. 343-348, Nov. 19-23, 2000.

[60] I. Tabus and J. Astola. MDL Optimal Design for Gene Expression Prediction from Microarray Measurements. Tampere University of Technology, Technical Report, ISBN.952-15-0529-X, November 2000.

[61] R. Iordache, I. Tabus. Robust Index Assignment for Finite-Memory Contagion Channels using Hadamard Transform. In 2000 International Symposium on Information Theory and Its Applications, Sheraton Waikiki Hotel, Honolulu, Hawaii, pp. 382-385, November 5-8, 2000.

[62] C.D. Giurcaneanu, Ioan Tabus. Escape Sequences for Lossless Audio Compression. In 2000 International Symposium on Information Theory and Its Applications, Sheraton Waikiki Hotel, Honolulu, Hawaii, vol. 1, pp. 386-389, November 5-8, 2000.

[63] R. Iordache, A. Beghdadi, I. Tabus. Vector Quantization with Edge Reconstruction. In 2000 International Conference on Image Processing, Vancouver, BC, Canada, pp. 167-170, September 10 -13, 2000.

[64] I. Tabus, C.D. Giurcaneanu, and J. Astola Optimal predictive design of Boolean and order statistics based filters. In EUSIPCO-2000, Tampere, Vol. 1, pp. 393-396, September 4-8, 2000.

[65] D. Stefanoiu, I. Tabus. A Method to Design Adaptive Discrete Time Wavelets. In EUSIPCO-2000, Tampere, Vol. 3, 1767-1770, September 4-8, 2000.

[66] B. Dumitrescu, I. Tabus. Predictive LSF Computation. In EUSIPCO-2000, Tampere, Vol. 2, 829-832, September 4-8, 2000.

[67] C.D. Giurcaneanu, I. Tabus, and J. Rissanen. MDL based digital signal segmentation. In EUSIPCO-2000, Tampere, Vol. 1, pp. 339-342, September 4-8, 2000.

[68] I. Tabus, R. Niemisto, J. Astola. A line spectrum approach for the design of optimum compaction FIR filters. In EUSIPCO-2000, Tampere, September 4-8, Vol. 3,1779-1782, 2000.

[69] C.D. Giurcaneanu, I. Tabus. On the sign of kurtosis. In The Second International Workshop on Independent Component Analysis and Blind Signal Separation, ICA-2000, Helsinki, Finland, pp. 499-502, June 19-22, 2000.

[70] C.D. Giurcaneanu, I. Tabus. Low complexity integer to integer transform coding. In: Creutzburg, R. et al. (eds.). Proceedings of First International Workshop on Spectral Techniques and Logic Design for Future Digital Systems, Tampere, Finland, June 2-3, pp. 453–468, 2000.

[71] R. Iordache, I. Tabus and J. Astola. Robust index assignment for quantization of LSF parameters transmitted over finite-memory contagion channels. In First IEEE Balkan Conf. on Signal Processing, Communications, Circuits and Systems, Istanbul, Turkey, pp. 8-11, June 2-3, 2000.

[72] J. Chen, I. Tabus and J. Astola. Quantization of LSF by Lattice Shape-Gain Vector Quantizer. In First IEEE Balkan Conf. on Signal Processing, Communications, Circuits and Systems, Istanbul, Turkey, pp. 13-16, June 2-3, 2000.

[73] I. Tabus, G. Korodi, J. Rissanen. Text compression based on variable-to-fixed codes for Markov sources. In DCC’2000, Data Compression Conference, Snowbird, Utah, pg.133-141, March 28-30, 2000.

[74] C.D. Giurcaneanu and I. Tabus. Independent component analysis based characteristic waveform decomposition for speech coding. In Proc. ISAS/SCI’99, 5’th International Conference on Information Systems Analysis and Synthesis, Orlando, FL, USA, vol. VI, 312-315, Jul.31-Aug.4, 1999.

[75] R. Iordache and I. Tabus. Index assignment for channels with memory using Hadamard transform. In Proc. ISAS/SCI’99, 5’th International Conference on Information Systems Analysis and Synthesis, Orlando, FL, USA, vol. VI, 316-312, Jul.31-Aug.4, 1999.

[76] A. Vasilache and I. Tabus. A polar vector quantizer for spherically symmetric sources. In Proc. ISAS/SCI’99, 5’th International Conference on Information Systems Analysis and Synthesis, Orlando, FL, USA, vol. VI, 263-270, Jul.31-Aug.4, 1999.

[77] B. Dumitrescu and I. Tabus. How to deflate polynomials in LSP Computation. In Proc. WS’99 IEEE Speech Coding Workshop, Haikko Manor, Porvoo, Finland, 52-54, 20-23 June 1999.

[78] C.D. Giurcaneanu, I. Tabus, and J. Astola. Integer wavelet transform based lossless audio compression. In Proc. NSIP-99, 1999 IEEE-Eurasip Workshop on Nonlinear Signal and Image Processing, Antalya, Turkey, 20-23 June, pp. 378–382, 1999.

[79] I. Tabus, and B. Dumitrescu. A new fast method for training stack filters. In Proc. NSIP99, 1999 IEEE-Eurasip Workshop on Nonlinear Signal and Image Processing, Antalya, Turkey, 20-23 June, pp. 511-515, 1999.

[80] C.D. Giurcaneanu, I. Tabus, and J. Astola. Forward and backward design of predictors for lossless audio coding. In Proc. CSCS-12, 12-th International Conference on Control Systems and Computer Science, Bucharest, Romania, 396-401, 26-29 May 1999.

[81] R. Iordache and I. Tabus. Index assignment using an ant system approach. In Proc. CSCS-12, 12-th International Conference on Control Systems and Computer Science, Bucharest, Romania, 391-395, 26-29 May 1999.

[82] B. Dumitrescu and I. Tabus. A Comparison of Deflation Algorithms. In Proc. CSCS-12, 12-th International Conference on Control Systems and Computer Science, Bucharest, Romania, 402-405, 26-29 May 1999.

[83] R. Iordache and I. Tabus. Index assignment for transmitting vector quantized LSF parameters over binary channels. In Proc. ISCAS’99, IEEE International Symposium on Circuits and Systems, Florida, vol. IV, 544-547, May 1999.

[84] I. Tabus, C. Popeea, and J. Astola. Optimizing the compaction gain in a class of IIR filters. In Proc. ISCAS’99, IEEE International Symposium on Circuits and Systems, Florida, vol. III, 528-531, May 1999.

[85] A. Vasilache, M. Vasilache, and I. Tabus. Predictive multiple-scale lattice VQ for LSF quantization. In Proc. ICASSP’99, IEEE International Conference on Acoustics, Speech and Signal Processing, Phoenix, vol. II, 657-660, March 1999.

[86] I. Tabus, C. Popeea, and J. Astola. On Optimizing the Compaction Gain. In Proc. Second International Workshop on Transforms and Filter Banks, Brandenburg, Germany, March 5-7, 1999.

[87] R. Iordache, I. Tabus, and J. Astola. Fixed-slope near-lossless context-based image compression. In Proc. ICIP’98, IEEE Conference on Image Processing, Chicago, pp. 512–515, Oct. 1998.

[88] C.D. Giurcaneanu, I. Tabus, and J. Astola. Adaptive context based sequential prediction for lossless audio compression. In Proc. Eusipco-98, IX European Signal Processing Conference, Rhodes, Greece, pp. 2349–2352, Sept. 1998.

[89] C.D. Giurcaneanu, I. Tabus, and J. Astola. Linear prediction from subbands for lossless audio compression. In Proc. NORSIG’98, IEEE Nordic Signal Processing Symposium, Vigso, Denmark, pp.225–228, June 1998.

[90] I. Tabus, C. Popeea, J. Rissanen, and J. Astola. Recursive Procedures for Extending Alphabet of Markov sources. Technical Report, 24 pages ISBN 951-722-936-6, Signal Processing Laboratory, Tampere University of Technology, Tampere, Finland, February 1998.

[91] I. Tabus, C. Popeea, J. Rissanen, and J. Astola. Alphabet extensions for Markov sources. In Proc. ITW’98 Information Theory Workshop, San Diego, California, pp. 78, February 8-11, 1998.

5. Presentations at international forums (5)

[92] I. Tabus. Using Minimum Description Principle to Infer Connections in Genetic Regulatory Models from Time Series Microarray Data. Workshop on Discrete Models for Genetic Regulatory Networks, Hilton hotel, College Station, Texas, November 5-6, 2003.

[93] I. Tabus. Information theoretic approach to genomics. In: Yli-Harja, O., Shmulevich, I., Aho, T. (eds.). Proceedings of the TICSP Workshop in Computational Systems Biology, WCSB 2003, Tampere, Finland, 16-17 June, p. 16–17 2003.

[94] I. Tabus. Genomic Signal Processing: A Tutorial. ISSPA 2003, 4 July, Paris, 2003.

[95] I. Tabus. Using the MDL principle for gene expression prediction from microarray measurements. 2’nd Annual Houston Forum on Cancer Genomics and Informatics, M.D. Anderson Cancer Center, Houston, Texas, July 27-28, 2001.

[96] I. Tabus. On the use of Hadamard transform for index assignment over channels with memory. Diderot Mathematical Forum, ”Mathematics and Telecommunications”, Eindhoven, Lausanne, Helsinki, November 22-23, 2001.