TUT logoSGN 6206 Genomic Signal Processing (5 op)

Lectures (24h):

Time and place:

Period III 2008-2009 (3.12-18.12.2008 and 7.1-22.1.2009)

Wednesdays  10:15-12:00, TB219

Thursdays      10:15-12:00, TB219

Ioan Tabus

Office: Room TF 414, Phone 3115 3911, E-mail: tabus@cs.tut.fi.

 

First Lecture: Thursday, 3.12.2008

Exercises and Project: Tuesdays 10-12 TC 407

First Exercises: Tuesday, 9.12.2008

Contents:

The student will learn several classes of problems arising in genomics and related bioinformatic fields, where signal processing algorithms have been show to play an important role.

Requirements:

Project and final exam.

Textbooks:

  1. Lecture notes: Course material available before each lecture
  2. "Genomic Signal Processing and Statistics" Edited by: EDWARD R. DOUGHERTY, ILYA SHMULEVICH, JIE CHEN, and Z. JANE WANG, Hindawi Publishing, 2005
  3. R. Durbin, S. Eddy, A.Krogh, G. Mitchison "Biological sequence analysis “ Probabilistic models of proteins and nucleic acids, Cambridge University Press, 2001