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The following two tables illustrate the performance of GeNML in comparison to a number of other DNA-special and general-purpose compression programs. All of the reported sequences are available from the tables for comparison, in both raw and GeNML formats.

The general-purpose encoders in the comparison are:
LabelProgramVersionAuthor
bzip2bzip21.0.2Julian Seward

The DNA-specific encoders are:
LabelProgramAuthors
Bio2Biocompress-2S. Grumbach and F. Tahi
CfactCfactÉ. Rivals, J.P. Delahaye, M. Dauchet and O. Delgrange
CTWCTW-LZT. Matsumoto, K. Sadakane and H. Imai
Gen2GenCompress-2X. Chen, S. Kwong and M. Li
DNADNACompressX. Chen, M. Li, B. Ma, and J. Tromp

First test set
Sequence.gmlSize bzip2Bio2Gen2 CTWDNAGeNML
chmpxx.gml 1210242.121.681.67 1.67 1.67 1.66
chntxx.gml 1558442.181.621.611.611.611.61
hehcmvcg.gml 2293542.171.851.851.84 1.85 1.84
humdystrop.gml 387702.181.931.92 1.92 1.911.91
humghcsa.gml 664951.731.311.10 1.10 1.03 1.01
humhdabcd.gml 588642.071.881.82 1.82 1.80 1.71
humhprtb.gml 567372.091.911.85 1.84 1.82 1.76
mpomtcg.gml 1866082.171.941.91 1.90 1.89 1.88
mtpacg.gml 1003142.121.881.86 1.86 1.86 1.84
vaccg.gml 1917372.091.761.761.761.76 1.76

Second test set
Sequence.gmlSize bzip2CfactGen2 GeNML
atatsgs.gml 96472.151.791.671.60
atef1a23.gml 60222.151.581.541.52
atrdnaf.gml 100142.151.811.791.76
atrdnai.gml 52871.961.471.411.36
celk07e12.gml 589491.911.711.611.46
hsg6pdgen.gml 521732.071.931.801.71
mmzp3g.gml 108332.131.911.861.82
xlxfg512.gml 193381.801.491.391.35

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Last modified: Sun May 15 05:41:00 EEST 2005